SRX13008740
GSM5669659: TF ChIP-seq from WTC11 (ENCLB780QBJ); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR1H2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

cell_line
WTC11
sample type
cell line
sex
male
dev stage
adult
age
30 year
donor ID
ENCDO882UJI
lab
Richard Myers, HAIB
source
Richard Myers

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
pipeline protocol: https://www.encodeproject.org/documents/efac5344-6834-4e12-b971-94994d992e86/@@download/attachment/ChIP-seq_Mapping_Pipeline_Overview.pdf pipeline protocol: https://www.encodeproject.org/documents/d00ffce2-e72c-44d7-a71f-73fd163c2426/@@download/attachment/ChIP-seq_pipeline_overview.pdf extraction protocol: https://www.encodeproject.org/documents/73c95206-fc02-41ea-93e0-a929a6939aaf/@@download/attachment/ChIP-seq%20protocol%2C%20ENCODE4%2C%20Myers%20Lab.pdf pipeline protocol: https://www.encodeproject.org/documents/efac5344-6834-4e12-b971-94994d992e86/@@download/attachment/ChIP-seq_Mapping_Pipeline_Overview.pdf, pipeline protocol: https://www.encodeproject.org/documents/d00ffce2-e72c-44d7-a71f-73fd163c2426/@@download/attachment/ChIP-seq_pipeline_overview.pdf, extraction protocol: https://www.encodeproject.org/documents/73c95206-fc02-41ea-93e0-a929a6939aaf/@@download/attachment/ChIP-seq%20protocol%2C%20ENCODE4%2C%20Myers%20Lab.pdf

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40988779
Reads aligned (%)
93.3
Duplicates removed (%)
19.2
Number of peaks
2324 (qval < 1E-05)

hg19

Number of total reads
40988779
Reads aligned (%)
92.9
Duplicates removed (%)
20.1
Number of peaks
2164 (qval < 1E-05)

Base call quality data from DBCLS SRA